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DAY 3


Friday, September 10, 2004

8:00-8:30    Morning Coffee

8:30-9:00    Reports from ThinkTank Sessions

BIOMARKER SERIES UPDATE

9:00-9:30    Series Update on Biomarker Discovery and Clinical Biomarkers
Dr. Stephen Naylor, CSBi and Division of Biological Engineering, MIT; and Dept. of Genetics and Genomics, Boston University School of Medicine
Just over a year ago, the first, in a series of CHI Biomarker conferences entitled "Protein Biomarkers-Applications in Diagnostics, Drug Discovery and Toxicoproteomics" was held in Philadelphia (August 25-26th, 2003). The attendees at this meeting discussed the exciting but somewhat nascent and chaotic state of biomarker fundamentals. A subsequent meeting "Biomarker Validation-Bridging Discovery to the Clinic" (Philadelphia, May 3-4th, 2004) discussed biomarker validation and its impact in drug development. Both conferences produced stimulating dialogue and debate. The subject matter covered included biomarker definitions, role of biomarkers in basic and translational research, validation of biomarkers, and impact on improving the drug discovery and development pipeline. As the two conferences highlighted, the paradox remains that whilst biomarker fundamentals are still being vigorously debated, their value in clinical analyses has also been clearly demonstrated. This presentation will provide an update on the state of biomarker fundamentals, as well as current status of biomarkers in clinical development.

NEW TECHNOLOGY SHOWCASE III

9:30-10:00    Metabolomics: Identifying Novel Biomarkers 
Dr. Chris Beecher, Vice President, Biochemistry and Technology, Metabolon
Advances in technology have allowed metabolomics to identify novel biomarkers that allow for the discrimination of patients sorting them into clinically recognized subsets. These biomarkers are not only diagnostic, but will also provide insights into the underlying pathology and thus new targets and approaches for drug development. Experimental metabolomic case studies will be presented.

10:00-10:15    Profiling Cancer Serum Biomarkers with High Density Antibody Chips
Dr. Robert Negm, Director, Business Development, Schleicher and Schuell BioScience, Inc.

10:15-10:30    Protein Biomarker Analysis Using Suspension Microarrays
Dr. Rajeev K. Dhawan, Director, Diagnostic Reagents, Charles River Laboratories

10:30-11:00    Coffee Break

Sponsored by:


ASSAY DEVELOPMENT AND VALIDATION

Discovering proteomic biomarkers is only the start: these biomarkers need to be clinically validated and developed into robust assays. This session will cover strategies and examples of biomarker validation and assay development, concluding with an interactive panel discussion on lessons learned from the diagnostics industry.

11:00-11:05    Chairperson's Opening Remarks

11:05-11:35    Development and Validation of Assays for Protein/Peptide Biomarkers
Mr. Francois Legay, Head of Marker and Assay Development, Novartis Pharma
The clinical validation of biomarkers is strongly dependent to the robustness and the reproducibility of the analytical methods used to monitor them. In this presentation will be described: The development and validation of ELISA for soluble biomarkers; the validation of flow cytometry assay to monitor intra-blood cell biomarkers.

11:35-12:05    Chips, Panels and Beads: An Array of Alternative Platforms for Designing a Biomarker Strategy for Staging Complex Diseases
Dr. John Bilello, Director of Technology Development, Human Biomarker Center, GlaxoSmithKline 
Complex and chronic diseases are a challenge in drug development due to their multi-component nature and the long-term disease course. Most complex diseases consist of a spectrum of disease states which are often loosely clinically defined. Biomarkers of disease state are seen as one approach to increased definition, stratifying patients for clinical trials and eventually assessing the efficacy of new compounds. A number of new technologies have been developed for measuring levels of multiple biological response modifiers and plasma proteins. Examples of protein biomarker-based strategies for staging complex diseases such as osteoarthritis are to be discussed. 

12:05:-12:30

PANEL DISCUSSION:
Are We Re-inventing the Wheel?

Lessons Learned From the Diagnostics Industry

Discussion Leader: To be Announced

Panelists:
• Mr. Francois Legay, Head of Marker and Assay Development, Novartis Pharma
• Dr. John A. Bilello, Director Technology Development, Translational Medicine & Technology,
   GlaxoSmithKline
• Dr. Walter Carney, President, Oncogene Science, Bayer Health Care

Discussion Topics Include:
• What's the "ideal" assay format for proteomic biomarkers?
• What lessons can be learned from the diagnostics industry?
• How can pharmaceutical and diagnostics industries work together more effectively? Are the
   regulatory frameworks sufficiently well set up? 
• Will bridging of pharma and diagnostics industries deliver on the promise of personalized
   medicine?

12:30-2:00 Luncheon Technology Workshop
2D-DIGE: Discover Real Differences in Protein Expression

Sponsored by:

Dr. Christine Rozanzas, Consultant, Applications, GE Healthcare

 

WHY PROTEIN BIOMARKERS? 
Pros and Cons vs. Genomic and Metabolomic Biomarkers

The advantages and challenges of proteomic biomarkers will be discussed in this closing session and interactive panel discussion. Specific examples and comparisons will be given to genomic and metabolomic biomarkers.

2:00-2:05    Chairperson's Opening Remarks
Dr. Stephen Naylor, CSBi and Division of Biological Engineering, MIT; and Dept. of Genetics and Genomics, Boston University School of Medicine

2:05-2:35    Integration of Multiple Biomarkers Throughout the Pharma R&D Processes
Dr. Jacky Vonderscher, V.P., Global Head of BioMarker Development, Novartis Institutes for BioMedical Research, Inc.
The use of biomarkers ranges from disease diagnostic markers to drug specific efficacy/safety markers. To achieve the full potential of biomarkers in drug development, an integration of different approaches is required throughout the entire R& D process. Hence, the biomarker strategy will have to be clearly established during the Discovery phase. Biomarkers can then be more precisely defined and validated to provide value during the Development phase. Only when a drug reaching the market clearly benefits or has benefited from the application of biomarkers, will their usefulness be proven.

2:35-3:05    Validation of Biomarkers for Use in Diagnostic Settings
Mr. Thomas Metcalfe, Head of the Roche Biomarker Program, Roche Molecular Systems, Inc. 
Many of the biomarkers used in the development of pharmaceuticals will not be used in clinical settings, but a subset will. These will be used in clinical trials and may be eventually required as companion diagnostics. These biomarkers require more thorough validation than those used in preclinical decision making and have the assays designed to measure these biomarkers have to be able to stand up to the rigors of the clinical diagnostics marketplace.

3:05:-4:00

PANEL DISCUSSION:
What's the Advantage of Proteomic Biomarkers
Over Genomic and Metabolomic Ones?

Discussion Leader: Dr. Stephen Naylor, CSBi and Division of Biological Engineering, MIT; and Dept. of Genetics and Genomics, Boston University School of Medicine

Panelists:

• Dr. Jacky Vonderscher, V.P., Global Head of BioMarker Development, Novartis Institutes for
   BioMedical Research, Inc 
• Mr. Thomas Metcalfe, Sr. Vice President, Roche Molecular Systems, Inc.
• Dr. Chris Beecher, Vice President, Biochemistry and Technology, Metabolon

Discussion Topics Include:
• What are the criteria or decision making process for selecting biomarkers? Does biology
   drive the selection of the biomarker platform?
• What is the state-of-the-technology in measuring—both discovery and clinical profiling—of
   genomic, proteomic, and metabolomic biomarkers?
• What "omic" biomarker predicts biological outcome with highest specificity and sensitivity? 
• What are the advantages of a "combined" systems biology approach?

4:00    Close of the Conference

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